Install¶
Conda¶
$ conda install -c bioconda hmnfusion
Pip¶
$ wget https://github.com/guillaume-gricourt/HmnFusion/releases/download/1.2.12/pip.zip
$ unzip pip.zip
$ pip install hmnfusion-1.2.12-py3-none-any.whl
$ rm pip.zip hmnfusion-1.2.12-py3-none-any.whl hmnfusion-1.2.12.tar.gz
Docker¶
Pull hmnfusion
. It contains Genefuse, Lumpy and HmnFusion.
$ docker pull ghcr.io/guillaume-gricourt/hmnfusion:1.2.12
Pull hmmnfusion-align
to create BAM files
$ docker pull ggricourt/hmnfusion-align:1.2.12
The reference files used to build BAM files refer to the DOI 10.5281/zenodo.6619597
Warning
The size of the image is almost 15Go
Dependencies¶
Genefuse and Lumpy are available in the docker
image.
But they are not installed with conda
and pip
.
You can install them in the current environment with this:
$ hmnfusion install-software