Install

Conda

$ conda install -c bioconda hmnfusion

Pip

 $ wget https://github.com/guillaume-gricourt/HmnFusion/releases/download/1.2.12/pip.zip
 $ unzip pip.zip
 $ pip install hmnfusion-1.2.12-py3-none-any.whl
 $ rm pip.zip hmnfusion-1.2.12-py3-none-any.whl hmnfusion-1.2.12.tar.gz

Docker

Pull hmnfusion. It contains Genefuse, Lumpy and HmnFusion.

 $ docker pull ghcr.io/guillaume-gricourt/hmnfusion:1.2.12

Pull hmmnfusion-align to create BAM files

 $ docker pull ggricourt/hmnfusion-align:1.2.12

The reference files used to build BAM files refer to the DOI 10.5281/zenodo.6619597

Warning

The size of the image is almost 15Go

Dependencies

Genefuse and Lumpy are available in the docker image. But they are not installed with conda and pip. You can install them in the current environment with this:

$ hmnfusion install-software